TABLE 1

Sequence processing summary averagesa

GroupAvg no. of readsAvg mapping %bAvg transcriptome coverage %c
PrefilteringPostfiltering
Challenged14,351,10011,019,84689.776.0
Nonchallenged14,478,10511,909,69089.875.7
Fayoumi13,487,62311,122,26789.876.0
Leghorn14,313,71611,770,19189.875.7
Overall13,900,67011,446,22989.875.8
  • a Averages were taken across four treatment groups.

  • b The mapping percentage was calculated as the number of reads mapped to the reference genome divided by the number of reads postfiltering.

  • c Transcriptome coverage percentage was calculated as the number of transcripts with at least one mapped read divided by the total number of transcripts.