Previous Article | Next Article ![]()
Clinical and Vaccine Immunology, June 2009, p. 899-905, Vol. 16, No. 6
1071-412X/09/$08.00+0 doi:10.1128/CVI.00005-09
Copyright © 2009, American Society for Microbiology. All Rights Reserved.

Laboratorio de Tecnología Biológica, Universidad Nacional del Litoral, Santa Fe, Argentina,1 Departamento de Química Analítica, Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, Rosario, Argentina2
Received 12 December 2008/ Returned for modification 30 January 2009/ Accepted 23 March 2009
|
|
|---|
|
|
|---|
For this purpose, we focused first on the rational selection of the antigenic peptides from those that have already proved to have diagnostic utility. We evaluated them alone, and we synthesized new multiepitope chimeric constructions by fusing the Ags that rendered better signal-to-noise ratios. Afterward, we analyzed the Ags' utility for T. cruzi infection diagnosis by comparing the ELISA performances displayed by the chosen synthetic peptides alone, their assortments, the new chimeric proteins with the selected peptides fused, and TPH. Finally, considering the permanent need to improve the selectivity and sensitivity displayed by T. cruzi Ags, the new, best-performing chimeric protein was preliminarily evaluated as a diagnostic tool with a 141-Chagas' disease-positive and 164-Chagas' disease-negative serum sample panel, and the results are discussed.
|
|
|---|
TPH. Epimastigotes of T. cruzi (Tulahuen strain) were grown in liver infusion tryptose medium supplemented with 10% fetal calf serum (7). TPH from epimastigotes was obtained by resuspension of the washed cells in 5 volumes of 1 mM N-p-tosyl-L-lysine chloromethyl ketone and 1 mM phenyl-methylsulfonyl fluoride in distilled water, frozen and thawed (four cycles), and subjected to posterior sonication (20 kHz, 30 W, 2 min).
Serum panel. Serum samples from T. cruzi-infected patients (n = 141) were obtained from the Regional Hospital of Reconquista (Santa Fe, Argentina). The T. cruzi infection status of the patients was established by using two different conventional tests based on epimastigote TPH Ags, namely, commercial ELISA (Chagatest ELISA) and IHA (Chagatest IHA) from Wiener Lab (Argentina). The serological condition was ascertained when concordant results were obtained while performing both conventional tests, as established by standard technical procedures and acknowledged by the WHO (10) (http://whqlibdoc.who.int/trs/WHO_TRS_905.pdf). Chagas' disease-negative serum samples without other reactivity (n = 164) were obtained from blood donors from the same hospital. Donors of these negative samples were clinically healthy individuals whose serum samples rendered negative results when tests for syphilis, human immunodeficiency virus, and hepatitis A, B, and C were performed. A leishmaniasic panel (n = 15) was kindly provided by M. E. Brito. Samples consisted of sera from patients with clinical manifestations of cutaneous leishmaniasis who inhabited a region of endemicity (Recife PE, Brazil). These patients were studied at the Centro de Pesquisas Ageu Magalhães, Fundação Oswaldo Cruz, Recife, Brazil, and were determined to be negative for T. cruzi infection.
Construction of expression plasmids. The nucleotide sequences of the T. cruzi genes encoding RP1, RP2, RP3, RP4, and RP5, homologous to Ags previously described (Table 1), were obtained from the GenBank database. As we have already demonstrated that proteins expressed using pET-32a vector show almost no unspecific reactions with the vector fusion protein TRX, we cloned all the sequences of interest using the mentioned vector (39). Genomic DNA from CL Brener strain epimastigotes was kindly provided by Patricio Diosque. This DNA was used as template for amplification of the selected encoded Ags, by means of standard PCR. Sequences of the primers used were as follows: RP1f (5'-GAATTCAAGAAGAAGCTTGCCGAC-3'), RP1r (5'-GAGCTCGCGTGCCAGCTCCTGTGC-3'), RP2f (5'-GAGCTCCTGATTGGCACGGAAGC-3'), RP2r (5'-GTCGACATCGGGCAAAATCAAAACC-3'), RP3f (5'-GAATTCAGCGTGCCTTGCCGCTGGAAG-3'), RP3r (5'-AAGCTTACGCACATCCTTCACAACAGG-3'), RP4f (5'-GAATTCAGGGCAGCTGAAGCCAC-3'), RP4r (5'-GCGGCCGCCTTCTCCGTCTCCACGGCC-3'), RP5f (5'-GAATTCAGCCGACGCCCAAAAAAGC-3'), and RP5r (5'-GTCGACGGCCTGTCCAAATAGTGA-3'). To build up CP2, the RP5 coding sequence was reamplified from the pET32a/RP5 construction using the primers RP5f (5'-GCGGCCGCAGCCGACGCCCAAAAAAGC-3') and RP5r (5'-CTCGAGGGCCTGTCCAAATAGTGA-3'). The identity of each nucleotide sequence obtained was confirmed by automatic sequencing in each cloning step (Sequencing Service, GAD, Universidad Nacional de La Plata). Plasmidic DNA minipreparations were performed according to the procedure described by Sambrook et al. (46). Escherichia coli cells bearing the plasmids of interest were harvested overnight in LB medium with 0.1 mg ml–1 ampicillin at 37°C. Competent bacteria were transformed by one-pulse electroporation (2.5 kV, 25 µF) using a Bio-Rad Gene Pulser (Bio-Rad Laboratories Inc.), under the conditions specified by the manufacturer.
|
View this table: [in a new window] |
TABLE 1. Comparison of recombinant and previously reported homologous Ags and their identity percentages
|
Protein antigenicity evaluation.
Polystyrene microplates (Costar) were sensitized with 1,000 ng TPH and 500 ng of recombinant protein per well, respectively, in carbonate buffer (pH 9.6). Peptide mixtures were prepared by adding equal amounts of each protein, and wells were then sensitized with 500 ng of the mixture. The microplates were incubated for 1 h at 37°C and washed thrice with 0.01% Tween in PBS, and the free polystyrene spaces were blocked with 5% skimmed milk in PBS for 1 h at 37°C. Microplates thus sensitized were incubated with a 1:100 dilution of human serum in 1% skimmed milk in PBS. After three washes with 0.01% Tween in PBS, microplates were incubated with peroxidase-conjugated goat anti-human immunoglobulin G (IgG), Fc
(Zymed), and diluted 1:5,000 in 1% skimmed milk in PBS. CP2 evaluation was carried out using the same protocol, except that sensitized wells were dried before use, and serum samples and peroxidase-conjugated IgG were diluted 1:20 and 1:15,000, respectively, in an attempt to reproduce dilutions currently used in commercial kits. The reaction was developed using tetramethyl benzidine (Zymed) in H2O2, using 1 M H2SO4 as stopper.
Data analysis. ELISA results, recorded as optical density (OD) at 450 nm, were distributed by using a scatter computer graphic software (GraphPad Prism version 2.00). All serum samples were evaluated in duplicate, with the result of the test being the mean OD value of these simultaneous determinations. ELISA cutoff values were calculated as the mean OD of the true negative serum samples plus 3 standard deviations of that mean. ELISA results were compared with the serologic status, previously confirmed by using two commercial kit assays, ELISA and IHA, according to the WHO acknowledged standard procedure (10) (http://whqlibdoc.who.int/trs/WHO_TRS_905.pdf). ELISA results were analyzed by plotting each positive result as the relative OD (+OD/cutoff, where +OD is the OD value of the positive serum sample and cutoff is the cutoff OD value). Inconclusive results were considered those produced by samples whose OD values fell into the undetermined zone, defined as a cutoff value of ±10%. Ag discrimination efficiency was evaluated by the formula +OD/cutoff, where +OD is the mean OD value of the positive serum samples tested. The discrimination limit was assessed by the formula +mOD/cutoff, where +mOD is the minimum OD produced by the least reactive Chagas' disease-positive serum sample. Sensitivity was expressed as 100 times the number of positive samples detected by using the assayed protein divided by the number of true-positive samples evaluated, confirmed as stated above (49). Specificity was expressed as 100x the number of negative samples detected by using the assayed protein divided by the number of true-negative samples evaluated, confirmed as stated above (49). Comparison and degrees of significance were assessed by Student's t test. The GraphPad Prism software was used to perform Student's t test to compare population distributions.
Nucleotide sequence accession numbers. CP1, CP2, RP1, RP2, RP3, RP4, and RP5 were deposited in GenBank under the accession numbers FJ440556, FJ440557, FJ440558, FJ440559, FJ440560, FJ440561, and FJ440562, respectively.
|
|
|---|
The immunochemical performance of the obtained peptides was initially tested to evaluate them as candidates to be used alone, in mixtures, and in multiepitope constructions. The ELISA results for 10 positive and 10 negative serum samples showed that RP3 and RP4 led to a higher number of positive results falling into the undetermined zone than RP1, RP2, and RP5. A second purification step (PAGE with subsequent electroelution) was carried out to confirm that no protein contamination was responsible for the high RP3 and RP4 backgrounds. The results for the same Chagas' disease-negative samples reproduced those previously obtained with purified RP3 and RP4 with Ni-nitrilotriacetic acid columns.
Chimeric proteins were subsequently designed using exclusively the peptides that performed better; CP1 was an assemblage of RP1 and RP2 peptides, whereas CP2 included these peptides plus RP5 (Fig. 1).
![]() View larger version (49K): [in a new window] |
FIG. 1. (A) Schematic representation of the construction and methods used to obtain the plasmids encoding the better-performing recombinant peptides selected, RP1, RP2, and RP5, and the chimeric proteins CP1 and CP2. (B) Amino acid sequences of the multiepitope chimeric proteins CP1 and CP2.
|
Protein antigenicity comparison. The antigenic performance of the selected peptides was evaluated when the Ags were used either individually (each peptide in a well), in mixtures (all the peptides in the same well), or combined in a unique chimeric construction. The same panel of 32 positive and 32 negative serum specimens was assayed, using as sensitizing Ags in ELISAs TPH, RP1, RP2, RP5, the RP1+RP2 mixture, the RP1+RP2+RP5 mixture, CP1, and CP2. Results for the relative OD distribution obtained for each Ag are shown in Fig. 2.
![]() View larger version (6K): [in a new window] |
FIG. 2. Relative OD distribution obtained for a panel of 32 Chagas' disease-positive serum specimens, using all the Ags studied. Horizontal lines show the discrimination efficiency values (the mean OD values of the positive samples tested divided by the cutoff value). (A) TPH and the isolated peptides RP1, RP2, and RP5. (B) RP1+RP2 mixture and RP1+RP2+RP5 mixture. (C) CP1 (fused RP1-RP2) and CP2 (fused RP1-RP2-RP5).
|
Comparison of the discrimination efficiency value of the RP1+RP2 mixture (Fig. 2B) with that of RP1 alone (Fig. 2A) indicated that they were similar (P = 0.281). However, the discrimination limit, +mOD/cutoff, was higher with the RP1+RP2 mixture than with RP1 alone.
Table 2 lists the cutoff values obtained for the selected Ags assayed, either alone, in mixtures, or as part of chimeric constructions and the discrimination limit (+mOD/cutoff) values produced by the least reactive serum. When analyzing the RP1+RP2+RP5 mixture performance versus the RP1+RP2 mixture performance, the cutoff value obtained for the former mixture was higher than that obtained for the latter (0.480 versus 0.163). This led to a lower discrimination efficiency value for the RP1+RP2+RP5 mixture (P = 0.0001) than for the RP1+RP2 mixture (Fig. 2B).
|
View this table: [in a new window] |
TABLE 2. Cutoff values for a panel of 32 Chagas' disease-negative serum specimens and discrimination limits for the selected peptides alone, in mixtures, and in multiepitope chimeric proteins
|
The comparison between CP1 and CP2 performances showed that the background produced by CP1, with a cutoff of 0.163, was lower than that obtained when using CP2, with a cutoff of 0.323 (Table 2). Consequently, CP1 discrimination efficiency was higher than that of CP2 (7.051 versus 5.564, respectively, P < 0.0001). However, it was also observed that low-reactivity serum samples produced higher relative ODs with CP2 compared to those with CP1 (Fig. 2C). In Table 2 it can also be seen that CP2 displayed the highest discrimination limit value produced by the least-reactive serum.
Assessment of the best multiepitope chimera sensitivity and specificity. The diagnostic performance of CP2 was evaluated in terms of sensitivity and specificity by using a panel of 109 additional Chagas' disease-positive and 132 additional Chagas' disease-negative serum specimens and 15 serum specimens from patients with clinical manifestations of cutaneous leishmaniasis, without other clinical infection. Results are presented in Fig. 3. The sensitivity and specificity for the whole serum specimen panel studied were 98.6% and 99.4%, respectively, when using CP2.
![]() View larger version (8K): [in a new window] |
FIG. 3. Relative OD distribution obtained using CP2 for a panel of 109 Chagas' disease-positive (Pos) and 132 Chagas' disease-negative (Neg) serum samples, together with 15 serum samples from individuals infected with Leishmania spp. (Leish). Horizontal lines show the discrimination efficiency values (mean OD values of the positive samples tested divided by the cutoff value).
|
|
|
|---|
The primary ELISA results using the Ags independently revealed that RP1, RP2, and RP5 appropriately discriminated between Chagas' disease-positive and -negative samples. Conversely, RP3 and RP4 displayed high ODs for the negative chagasic serum specimen tested. Although these results differ from others previously reported for Ags homologous to RP3 and RP4 (references in Table 1), the discrepancy was attributed to a different antigenic performance originated by the use of another expression system, as used in our case, in agreement with other reports (39).
We therefore excluded RP3 and RP4 from further analysis and selected RP1, RP2, and RP5 to elucidate which of two different Ag-building strategies was more convenient: the use of either recombinant peptide mixtures or single chimeric proteins fusing the DNA sequences all together in the same molecule. To achieve this goal, we compared the ELISA performances of the Ags used separately, in mixtures (RP1+RP2 and RP1+RP2+RP5), or as part of unique fusion proteins CP1 and CP2 carrying RP1-RP2 and RP1-RP2-RP5, respectively.
Performance of single recombinant antigenic peptides versus their mixtures. In general terms and supporting previous reports, the use of Ag mixtures enhanced the ELISA performance compared with use of the individual Ags (52). Thus, as can be seen in Fig. 2, the discrimination efficiency of the RP1+RP2 mixture was higher than those of isolated RP1 or RP2, whereas the RP1+RP2+RP5 mixture rendered higher relative ODs for low-reactivity serum samples than those displayed by individual RP1, RP2, or RP5 peptides. It should be noted, however, that the discrimination efficiency of the RP1+RP2+RP5 mixture was inferior to those of isolated RP1 and RP5. In point of fact, the RP5 presence notably increased OD values for low-reactivity serum samples exclusively, whereas the OD values for highly reactive samples were similar to the values obtained for the isolated peptides. Additionally, a higher cutoff value was obtained when using the RP1+RP2+RP5 mixture (Table 2) compared with the two-component mixture. Even though this may represent a drawback, the general ELISA performance was indeed improved because conflictive, undetermined results obtained with isolated Ags turned out not to be so when using the three-component mixture, which produced higher OD values that were farther from the cutoff value.
Umezawa et al. reported ELISA results from the use of both isolated antigenic peptides and their mixtures (52). From their results, it can be inferred that the assay sensitivity not only increased for low-reactivity serum samples, as we observed, but also for highly reactive serum samples, when using peptide mixtures. However, their results were obtained with different Ags (MAP, JL8, and TcPo instead of RP1, RP2, and RP5, which were used here). Moreover, they sensitized the microplates with a lower Ag amount (ca. 15 versus 500 ng of peptide mixture per well). Therefore, the reason for the discrepancy is not only the Ag nature but also that small amounts of adsorbed protein lead to the preferential recognition of high-affinity Abs, whereas large amounts of adsorbed proteins allow for the recognition of both low- and high-affinity Abs (28).
Peptide mixtures versus multiepitope chimeras. Although the current trend is to use chimeras as sensitizing Ags, the pros and cons regarding the use of chimeric fusion proteins versus recombinant peptide assortments still remain to be proved, since no previous work has carried out a systematic comparison between the two approaches. When analyzing the behavior of chimeras versus the behavior of peptide mixtures, the immunoassay merit figures (e.g., discrimination efficiency and discrimination limit) were boosted again for multiepitope chimeric constructions compared with peptide assortments. Indeed, CP1 discrimination efficiency was remarkably higher (ca. 25%) than that of the RP1+RP2 mixture (7.091 versus 5.614, respectively). Similarly, the CP2 discrimination efficiency was notably higher (ca. 52%) than that displayed by the RP1+RP2+RP5 mixture (5.591 versus 3.682, respectively). It has been proposed that peptides in mixtures may decrease their individual antigenicity once adsorbed on solid phases because of the blockage of essential chains (20-23, 47). Another hypothesis to explain these results is that when antigenic peptides present in the mixture adsorb to the well, they compete for the binding sites, leading to sensitivity loss. This phenomenon has also been proposed to explain the decrease of human IgG attachment to ELISA microplates when the Abs are part of a mixture of diverse molecules (29). On the other hand, when sensitizing microplates with chimeric constructions, the protein may adsorb to the well binding site through certain sites, leaving the rest of the molecule available to freely react without steric constrains. Therefore, even when some epitope blockage may occur, other epitopes could still be exposed appropriately to further interact with their specific Abs (Fig. 4). Hence, multiepitope proteins may render a greater available epitope-to-well active site ratio, which would eventually enhance the sensitivity of the assay.
![]() View larger version (31K): [in a new window] |
FIG. 4. Illustration of the well-sensitizing step, which is followed by the Ag-Ab reaction for the RP1+RP2+RP5 peptide mixture and the CP2 chimeric protein bearing the fused RP1-RP2-RP5 peptides.
|
Evaluation of CP1 and CP2 as T. cruzi infection diagnostic tools. Contrary to our expectations, the performance comparison of CP1 versus CP2, bearing RP1-RP2 and RP1-RP2-RP5, respectively, revealed that RP5 inclusion into the chimeric construction produced a discrimination efficiency decrease, due to the cutoff value rise from 0.162 for CP1 to 0.323 for CP2. Indeed, this is the same phenomenon we observed when the behavior of peptide assortments was analyzed during assessment of the performances of the RP1+RP2 mixture versus the RP1+RP2+RP5 mixture. The cutoff value increased from 0.163 to 0.480 when RP5 was added to the two-component mixture. Hence, both cases indicated that the presence of RP5 together with the other Ags favored unspecific Ag-Ab binding. This phenomenon is perhaps the consequence of interpeptide interactions leading to some epitope conformational arrangement, which allows further recognition not only by specific anti-T. cruzi Abs but also by nonspecific Abs commonly present in healthy individuals.
Even though the discrimination efficiency diminished from 7.059 to 5.591 when the sensitizing Ag was changed from CP1 to CP2, it should be pointed out that every low-reactivity serum sample tested produced higher OD values with CP2 than with CP1. A central drawback when diagnosing chagasic infection is the occurrence of inconclusive results due to OD values falling into the undetermined zone. For that reason, the capability to produce OD values far away from the cutoff, even for low-reactivity samples, is a highly appreciated Ag feature. Bearing this in mind, and as a means to evaluate this attribute, we calculated the discrimination limit value, +mOD/cutoff, i.e., the minimum OD produced by the least reactive Chagas' disease-positive serum sample divided by the cutoff value for CP1, CP2, and TPH (Table 2). CP2 rendered the highest discrimination limit value (4.571) compared to CP1 (2.874) and to TPH (3.454). This is a remarkable feature, since recombinant proteins expose less epitope variety than that shown by TPH, for which a higher signal should be expected. A hypothesis to explain this is that CP2 antigenicity is higher than that of other parasite proteins also present in TPH, which compete for the microplate binding sites. Thus, the use of TPH may lead to smaller amounts of highly antigenic peptides attaching compared to the use of CP2. Indeed, this is an outstanding attribute related to CP2's potential to reduce the number of undetermined results.
To preliminarily assess the immunochemical behavior of the best Ag obtained, CP2, we performed ELISAs with a complementary serum panel, which included 15 serum samples from patients suffering from leishmaniasis (Fig. 3), a disease known to cause false-positive results for T. cruzi infection diagnosis. When evaluating these serum samples against TPH, 60% of them gave false-positive results (data not shown). However, the outcome obtained with CP2 showed that the specificity rose to 93% for these leishmaniasic-conflictive serum samples, with an overall specificity of 99.4% for the 164 negative serum samples assessed. Moreover, most of the negative serum samples assayed with CP2 rendered OD values that were clearly below the cutoff line, even those serum samples that previously fell into the undetermined zone with the other Ags.
Summarizing, the whole set of results obtained in the present work allows the following conclusions to be drawn. (i) The multiepitope fused Ags obtained, CP1 and CP2, display better ELISA performances than mixtures containing the same antigenic peptides, each one as a single entity. (ii) The pilot assessment of CP2 showed that the new chimeric protein that gathers RP1, RP2, and RP5 in the same molecule was antigenic enough to produce a suitable sensitivity to diagnose T. cruzi infection for the samples studied. Moreover, CP2 displayed discrimination efficiency similar to that of TPH, with the added value of a higher capacity to solve out undetermined results for the serum panel tested.
This work was funded by CONICET (PIP no. 5303), ANPCyT (PICTR2002-00057), and UNL (CAI+D 12/B608).
Published ahead of print on 1 April 2009. ![]()
|
|
|---|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Copyright © 2010 by the American Society for Microbiology. For an alternate route to Journals.ASM.org, visit: http://intl-journals.asm.org | More Info»