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Clinical and Diagnostic Laboratory Immunology, April 2005, p. 484-490, Vol. 12, No. 4
1071-412X/05/$08.00+0 doi:10.1128/CDLI.12.4.484-490.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.
Department of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin,1 Wisconsin Veterinary Diagnostic Laboratory, Microbiology Section, Madison, Wisconsin,2 Department of Pathobiology, College of Veterinary Medicine, Nursing and Allied Health, Tuskegee University, Tuskegee, Alabama3
Received 8 September 2004/ Returned for modification 13 October 2004/ Accepted 7 January 2005
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Several protein components, including attenuated whole bacterial cells, have been evaluated as vaccines against S. suis. However, these studies did not achieve much success because the protection was either serotype or strain dependent, and in some instances the results were ambiguous (8, 9, 10, 27). For example, Jacobs et al. (10) evaluated a suilysin-based subunit vaccine and showed that it conferred complete protection. However, the absence of suilysin in a substantial number of isolates recovered from diseased pigs hampers the use of this vaccine (14, 19). Thus, identification of other antigenic factors will contribute to the development of a monovalent or a multivalent subunit vaccine that will protect pigs against infection by all capsular types.
In our effort to identify an S. suis gene(s) that may be involved in virulence and proteins that may be useful in the development of a reliable diagnostic reagent or vaccine to protect against infection with this bacterium, we identified a DNA region from a virulent strain of S. suis serotype 2 that encoded a polypeptide of 38 kDa. Of the 35 S. suis serotypes currently known, 31 contain and express the gene. The gene product was reactive with serum from pigs with S. suis infection, and the protein induced protective immunity in experimentally challenged pigs, making it a candidate for consideration in the development of a diagnostic reagent and vaccine.
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, was used as the library expression vector; and pGEM (Promega, Madison, Wis.) was used for DNA sequencing. Luria-Bertani broth or agar was used to grow the E. coli strains. Todd-Hewitt medium supplemented with 0.6% yeast extract (Difco Laboratories, Detroit, Mich.) was used to grow the S. suis strains. When appropriate, ampicillin was used at 60 µg/ml for E. coli cultures. All cultures were incubated at 37°C. Chemicals and enzymes. Enzymes were purchased from Promega or New England Biolabs (Beverly, Mass.) and were used as recommended by the manufacturer. Chemicals were purchased from Sigma Chemical Co. (St. Louis, Mo.) or Fisher Scientific (Pittsburgh, Pa.). The digoxigenin-labeled DNA molecular-weight marker II and the digoxigenin-11-dUTP DNA-labeling kit and detection system were from Boehringer Mannheim (Indianapolis, Ind.). Serum samples were collected from seven pigs experimentally infected with virulent strains of S. suis type 2.
Construction and screening of a recombinant DNA library.
S. suis DNA, which was extracted by a previously described method (13), was digested with the EcoRI restriction endonuclease. Restriction fragments were then size fractionated by agarose gel electrophoresis. Fragments in the size range of 1 to 23 kb were excised from the gel, purified by electroelution, and ligated into the pUC18 plasmid cloning vector that had been digested with EcoRI. The recombinant plasmids were transformed into E. coli DH5
by electroporation. Transformed cells were plated unto Luria-Bertani agar containing 60 µg of ampicillin per ml, isopropyl-ß-D-thiogalactopyranoside (4 µl of a 20% solution), and 5-bromo-4-chlor-3-indolyl-ß-D-galactopyranoside (40 µl of a 20-mg/ml solution) and grown at 37°C overnight. The resulting white colonies were transferred to a fresh plate and were grown as described above. One loopful of each colony was solubilized in 100 µl of 1x sodium dodecyl sulfate (SDS) sample buffer by heating for 5 min at 100°C. The preparation was centrifuged for 2 min at 13,000 x g to remove the cellular debris; and the cell-free lysate was used for Western blot analysis with a 1:500 dilution of polyclonal antibody raised against the whole-cell protein of S. suis type 2 as the primary antibody, followed by incubation in a 1:1,000 dilution of anti-rabbit immunoglobulin G (IgG) conjugated with horseradish peroxidase. The blots were developed with hydrogen peroxide and 4-chloro-1-naphthol. A colony designated DH5
(pOT301) was identified and characterized.
Nucleotide sequence determination and bioinformatics. The complete nucleotide sequences of both strands of the 2.0-kb EcoRI fragment in plasmid pOT301 were determined by the dideoxy-chain termination method (18) with an automated nucleotide sequencer (Applied Biosystems, Foster City, Calif.). The nucleotide sequences and the deduced amino acid sequences were analyzed with MacVector software (Oxford Molecular Group, Inc., Campbell, Calif.). Searches for the similarity of the sequences with the sequences in GenBank were performed by using the BLAST network service.
PCR. Oligonucleotide primers were designed by using the 38-kDa gene sequence data. The sequences of the primers were 5'-ATGCCACGGATTACCTTCCC-3'(primer BAY46F) and 5'-CCGTCTCCTTAATGATCCGC-3' (primer BAY46R). The primer pair was designed to amplify a 253-bp product from S. suis DNA. Amplification was performed with 100 ng of purified genomic DNA in a total volume of 50 µl containing 10 mM Tris-HCl (pH 8.3), 1.5 mM MgCl2, 50 mM KCl, 0.001% gelatin, 200 µM each deoxynucleoside triphosphate (dATP, dCTP, dGTP, and dTTP), 1 µM each primer, and 2.5 U of Taq polymerase (Perkin-Elmer Corp., Norwalk, Conn.). The PCR assay was carried out in a Perkin-Elmer 2400 thermocycler, comprising 5 min of preincubation at 94°C, followed by 35 cycles of 1 min at 94°C, 1 min at 55°C, and 1 min at 72°C. A final extension was performed for 7 min at 72°C. The negative control was a reaction mixture containing all reagents but no DNA template. The PCR products were visualized by electrophoresis on a 0.8% agarose gel by standard procedures.
Electrophoresis and Southern blotting. Three micrograms of genomic DNA was digested with EcoRI, and the fragments were separated on a 0.8% agarose gel (Promega) and transferred to a nylon membrane (Boehringer Mannheim) by the method of Southern (17, 23). After the fragments were transferred, the DNA was UV crossed-linked to the membrane (GS gene linker; Bio-Rad, Richmond, Calif.).
Probe preparation and hybridization. A 1,170-bp EcoRV-HindIII internal DNA fragment from pOT301 was labeled with digoxigenin-11-dUTP, according to the specifications of the manufacturer (Genius System; Boehringer Mannheim). Hybridization, washes, and hybrid detection were done according to the instructions provided with the Genius II nonradioactive labeling and detection kit (Boehringer Mannheim).
Analysis of the regions flanking the gene. To extend the known sequence beyond the EcoRI site flanking the gene, inverse PCR (IV-PCR) was performed with primers HP6 (5'-CTCGTCACGGGAAAACCATG-3') and HP7 (5'-TGCTTCTTGGATACCTGCTG-3'). Chromosomal DNA from S. suis strain 1933 was restricted with HindIII and religated prior to IV-PCR. The PCR product was purified and sequenced with the same primers, and the nucleotide sequence was used to design primers that permitted analysis of DNA from isolates with different hybridization patterns.
Overexpression and purification of the recombinant 38-kDa protein. A 1,626-bp PCR fragment containing the open reading frame of the gene encoding the 38-kDa protein was obtained by amplification of pOT301 DNA with primers BAY46-1 (5'-CTA CGG CTA GAG TAC TCG GC-3') and BAY 46-2 (5'-CAG TCA ATA TCG GCT CGA CC-3') and cloned into the pCR 2.1 vector (Invitrogen, Carlsbad, Calif.) to create pOT308. To clone the 1,626-bp fragment in frame for overexpression, pOT308 was digested with the XhoI and KpnI restriction enzymes in combination to release the fragment. The fragment was then purified and ligated into the XhoI and KpnI sites of the pBAD/Myc-HisA expression vector to create pOT312. Plasmid pOT312 was transformed into E. coli TOP10 competent cells and overexpressed with arabinose according to the protocol of the manufacturer (Invitrogen). Following arabinose induction, the protein was purified as described previously (15).
Antigen and polyclonal antibody preparation. Polyclonal antibody against the recombinant protein was obtained by immunizing New Zealand White rabbits (Shelton's Bunny Barn Rabbits, Waverly Hall, Ga.) subcutaneously at multiple sites with approximately 200 µg of purified protein emulsified 1:1 with Freund complete adjuvant. The rabbits received one booster injection with the same antigen concentration emulsified 1:1 with Freund incomplete adjuvant 14 days later and were then bled 7 days after the booster was administered. The sera were filter sterilized and stored at 30°C until they were used.
Western immunoblotting and in vitro transcription-translation experiments. Cell lysates, prepared as described above, were vacuum concentrated (15-fold), and 15 µl of sample was used for Western blot analysis (17). The proteins were reacted with a 1:500 dilution of the polyclonal antibody raised against the purified 38-kDa protein and then with a horseradish peroxidase-conjugated goat anti-rabbit IgG antibody (ICN) diluted 1:1,000. Bound antibodies were detected colorimetrically with hydrogen peroxide and 4-chloro-1-naphthol. To screen pig antisera for antibody against the 38-kDa antigen, a 1:100 dilution of the pig sera was used as the primary antibody, followed by the addition of a 1:1,000 dilution of alkaline phosphatase-conjugated affinity-purified anti-swine IgG (Rockland Immunochemicals, Gilbertsville, Pa.). The blots were developed with a 5-bromo-4-chloro-indolylphosphate-nitroblue tetrazolium salt mixture. For in vitro protein synthesis, 3 µg of purified plasmid DNA was added to an E. coli cell extract that contained [35S]methionine and that was capable of coupled transcription-translation of exogenous DNA (Promega). The resulting translation products were separated by SDS-polyacrylamide gel electrophoresis (PAGE). After electrophoresis, the gel was dried and exposed to X-ray film (Kodak X-OMAT AR) at 70°C for 2 days, and the film was developed in a Kodak film processor.
Cellular location of the 38-kDa protein. The surface, cell wall, cytoplasmic, and periplasmic protein fractions of S. suis were prepared by previously described methods (12, 20, 26) and analyzed by Western blotting with a polyclonal antibody directed against the purified 38-kDa antigen.
Animals, immunization, and challenge. Ten pigs (age, 3 weeks; average weight, 14 lb) were purchased from the Auburn University Swine Facility, Auburn, Ala.
The ears of the pigs were tagged with colored numbers for identification purposes and divided into two groups of five pigs each. The first group of pigs (red tag; identification numbers 43, 44, 45, 46, and 47) consisted of the vaccination group, and the second group (blue tag; identification numbers 92, 93, 94, 95, and 96) consisted of the control group. Prior to administration of the first dose of vaccine, serum (preimmune) was collected from all animals and screened to rule out the presence of serum antibodies against S. suis. The pigs in the first group were then vaccinated intramuscularly at two injection sites in the neck with 1 ml of vaccine preparations emulsified in Freund complete adjuvant. Each animal received approximately 100 µg of the purified recombinant 38-kDa protein-based vaccine, and the second group of pigs (pigs 92, 93, 94, 95, and 96) received a placebo composed of physiological saline in adjuvant (negative control). Two weeks after the initial vaccination, serum was collected from all pigs for antibody screening; and the pigs received a booster of the same vaccine preparations by the same route, but this time the vaccine was emulsified 1:1 with Freund incomplete adjuvant. Fourteen days after administration of the booster, serum was again collected from the pigs, followed by intravenous challenge in the ear vein with 1.5 x 106 CFU of an overnight culture of the homologous S. suis serotype 2 strain. The pigs were monitored twice daily for clinical signs of disease.
Nucleotide sequence accession number. The GenBank accession number for the 38-kDa protein sequence reported in this paper is AF389083.
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(pOT301) that produced a 38-kDa protein which reacted faintly with a polyclonal antibody, which was raised in rabbit cells, against the whole-cell protein of S. suis type 2 (data not shown). Because of the poor reactivity of the antibody to the protein, an in vitro protein synthesis experiment was performed to verify gene expression and to confirm the size of the gene product. The result confirmed that the gene is expressed and that the size of the product is 38 kDa (Fig. 1). Restriction analysis localized the gene within a 2.0-kb EcoRI fragment, and expression was orientation dependent in the pUC18 cloning vector (data not shown).
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FIG. 1. Translation products of the plasmid carrying the gene encoding the 38-kDa protein. An autoradiograph of the [35S]methionine-labeled products synthesized in an E. coli K-12 extract and separated by SDS-PAGE is shown. Lanes: 1, products of a positive control (Promega); 2, reactions of the gene template encoding the 38-kDa protein (pOT301); 3, reactions of the plasmid cloning vector pUC18 without the insert; 4, product of a control reaction with no template. The location of the ca. 38-kDa protein is indicated on the left. The molecular mass standard was very faint and as such was not labeled. The lower faint band in lane 2 was considered the plasmid cloning vector-coded protein since it is also present in lane 3.
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FIG. 5. Immunoblot (Western blot) analysis with polyclonal antibody raised against the purified recombinant 38-kDa protein showing expression of the gene encoding the 38-kDa protein by strains of other serotypes. Lanes: M, rainbow molecular size marker (in kilodaltons; Amersham); 1, purified recombinant 38-kDa protein; 2, whole-cell lysate of S. suis serotype 2 strain 1933; 3, whole-cell lysate of a serotype 1 strain; 4, whole-cell lysate of a serotype 1/2 strain; 5, whole-cell lysate of a serotype 7 strain; and 6, whole-cell lysate of a serotype 9 strain. The location of the 38-kDa protein is indicated by the arrow on the left. Other reactive bands (lanes 2 to 6) were considered S. suis protein bands that cross-reacted with the antibody.
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A search of the GenBank database revealed that the sequences shared 83% identity at the nucleotide level to a gene of unknown function from the complete genome sequence of Streptococcus pneumoniae. At the amino acid level, the deduced primary sequence shared homology with those of unknown function from S. pneumoniae (89%), Streptococcus mutans (86%), Lactococcus lactis (80%), Listeria monocytogenes (74%), and Clostridium perfringens (64%).
PCR and hybridization. To demonstrate that the cloned fragment originated from S. suis and to examine the extent of conservation of the gene among the S. suis capsular types, PCR primers whose sequences were derived from the nucleotide sequence of the cloned fragment were used to amplify the DNA of the native S. suis strains encompassing all serotypes. The primers amplified the DNA from strains of most serotypes and produced a fragment of the expected size. DNA from strains belonging to serotypes 20, 26, 32, and 33 were nonreactive to the primers, as evidenced by the lack of an amplicon on agarose gels (Fig. 2). Because insufficient homology at the primer binding regions could result in the lack of amplification, we used hybridization experiments following EcoRI digestion to verify the PCR results. On the basis of the results of the analysis of our cloned fragment, digestion with the enzyme would produce a 2.0-kb fragment that would hybridize to the probe whose sequence was derived from within the gene. The results of the PCR and the hybridization methods were in agreement, suggesting that the cloned fragment originated from S. suis and that the gene is absent from strains of some serotypes. Unlike PCR, the hybridization studies revealed the existence of restriction fragment length differences that separated the strains into three genetic groups on the basis of the resulting fragment sizes of approximately 1.8, 2.0, and 5.0 kb, respectively (Fig. 3).
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FIG. 2. Example of ethidium bromide-stained agarose gels of PCR products with primers designed from the gene sequences encoding the 38-kDa protein. DNA from strains of serotypes 1/2 and 1 to 10 (lanes 1 to 11, respectively) and serotypes 20, 26, 32, and 33 (lanes 12 to 15, respectively) was used as the template. Lane M, HaeIII-digested X174 DNA molecular mass markers (Promega); lane 16, a negative control (no template). The expected migration of the amplicons is indicated on the left.
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FIG. 3. Southern blot of chromosomal DNA from different strains of S. suis type 2 (lanes 1 to 11) digested with EcoRI and hybridized to the 1,170-bp EcoRV-HindIII fragment derived from the gene encoding the 38-kDa antigen. Lane M, digoxigenin-labeled molecular weight marker II (Boehringer Mannheim).
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Construction and overexpression of the 38-kDa protein. To produce a sufficient quantity of the protein for antibody production, the cloned fragment was inserted in frame into the pBAD/Myc-His version A expression vector (Invitrogen) as described in Materials and Methods, overexpressed, and gel purified. The purified protein gave a prominent 38-kDa band (Fig. 4) and was used to generate polyclonal antibody in rabbit cells.
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FIG. 4. Coomassie blue-stained SDS-polyacrylamide gel of the overexpressed and purified 38-kDa recombinant protein. The protein was overexpressed and purified as described previously (15). Lanes: M, rainbow molecular size marker (in kilodaltons); 1, whole-cell lysate of the uninduced pOT312 transformant of E. coli TOP10; 2, whole-cell lysate of the E. coli transformant with pOT312 following induction with arabinose; 3, recombinant protein purified from the pOT312 transformant of E. coli TOP10.
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FIG. 6. Immunoblot analysis of pig sera and their reactivities against the purified recombinant 38-kDa protein. Lanes: M, molecular size marker; 1 through 7, serum from pigs infected with S. suis type 2; 8, polyclonal antibody raised in a rabbit against the purified recombinant 38-kDa protein (positive control); 9, preimmune serum from the rabbit used to raise antibody against the purified protein (negative control); 10, preimmune serum from a pig prior to infection (negative control). Each lane is a strip cut from the membrane following Western transfer and prior to exposure to antibody.
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TABLE 1. Expression of the gene encoding the 38-kDa antigen by strains of different S. suis capsular types, as determined by immunoblot analysis
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FIG. 7. Immunoblot analysis of proteins from cellular fractions of S. suis strain 1933 with polyclonal antibody raised against the purified 38-kDa recombinant protein. Lanes: M, molecular size standard; 1, the purified 38-kDa protein (positive control); 2, cell wall fractions; 3, surface fractions; 4 and 5, cytoplasmic fractions; 6, periplasmic fraction; 7, cell-free culture supernatant.
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TABLE 2. Production of antibody against the 38-kDa antigen by individual pigs and antibody reactivity with the antigen, as determined by Western blot analysis
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TABLE 3. Mortality rate among pigs immunized with the S. suis 38-kDa recombinant protein following challenge with a homologous S. suis type 2 strain
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This report describes the identification and characterization of the gene encoding a 38-kDa protein from a virulent strain of S. suis type 2, strain 1933. Characterization of the gene product showed that it is immunogenic in swine infected with pathogenic strains of S. suis type 2 as well as in swine vaccinated with the purified protein and provided protection against challenge with a strain of a homologous serotype. The protein was detected in S. suis cell wall and surface extracts and shares properties with the native protein. For example, a polyclonal antibody raised against the recombinant protein recognized the native protein from S. suis type 2, and the recombinant and native proteins had identical molecular masses (Fig. 5). The size similarity of the recombinant and native proteins and the reactivity between the recombinant and native proteins indicate that the recombinant protein was not altered in E. coli.
In an in vitro gene expression system, the cloned gene directed the production of a ca. 38-kDa polypeptide. This molecular mass is consistent with that observed by Western blotting with polyclonal antibody directed against the purified recombinant protein (Fig. 1, 5, and 7) but different from the calculated molecular mass of 46.4 kDa derived from the deduced amino acid sequence. The size disparity may be due to protein processing or anomalous migration of this primarily hydrophobic protein in SDS-polyacrylamide gels. It is also possible that the lack of a bulky amino acid residue such as tryptophan may influence the mobility of the protein in the gel.
The expression of the cloned gene in E. coli in the plasmid cloning vector pUC18 is orientation dependent, because in the reverse orientation the protein could not be detected on Western blots or in an in vitro gene expression system (data not shown). Thus, the cloned gene is probably not expressed from its own promoter, or it may contain a promoter that did not function in E. coli. In this case, expression is probably under the control of the ampicillin resistance gene promoter in the pUC18 cloning vector.
Surface-exposed and cell wall-associated proteins of bacteria are, in general, targets for vaccine development or the production of serodiagnostic reagents. In this study, the 38-kDa antigen was detected in the cell wall, surface, and cytoplasmic fractions (Fig. 7). We were therefore unable to conclude where the protein is located by the techniques that we used (12, 20, 26). However, cross contamination between fractions cannot be ruled out. A different approach is therefore needed to solve this problem.
The GenBank database is a useful source for the prediction of protein function. A search of the database revealed that the deduced primary sequence of the 38-kDa protein shared homology with sequences of unknown function in some gram-positive bacteria. We were therefore unable to use the database to assign a putative function to the protein. Nonetheless, it is safe to assume that the protein serves a common function in gram-positive bacteria. Work is under way in an effort to determine its function.
A recombinant subunit vaccine (suilysin) that confers protection in pigs has been reported previously (10). However, the usefulness of the vaccine was limited because the target protein is absent from a large number of S. suis strains isolated from diseased pigs (10, 14). In another study, purified muramidase-released protein and extracellular factor reportedly conferred protection in experimentally challenged pigs (27). However, most of the S. suis serotype 2 strains isolated from diseased pigs in Canada were negative for muramidase-released protein and extracellular factor (4). In this study, we tested strains from various geographical locations, including the United States, Canada, and Europe. Except for strains of serotypes 20, 26, 32, and 33, which lack the gene and which, as a result, do not produce the protein, strains of all other S. suis serotypes, regardless of their origins, contain the gene and express the 38-kDa protein. Strains of S. suis serotypes 1/2, 1, 2, 7, 9, and 14 are the most commonly associated with disease, with type 2 being the most significant (7, 16, 24). Strains of serotypes 20, 26, 32, and 33 are clinically insignificant and as such are not of major concern at present. Thus, the 38-kDa antigen has the potential for use in the development of a mono- or multivalent vaccine to protect against S. suis diseases.
Genetic heterogeneity can be a result of a mutation, insertion of a genetic element, or a deletion. Because genetic heterogeneity has previously been demonstrated in S. suis strains (13), we were interested in determining the molecular basis for the restriction fragment length differences observed in this study. Although point mutations are rare events, we noted that a point mutation in the EcoRI recognition sequence located 190 bp from the stop codon of the gene encoding the 38-kDa antigen was the basis for the differences. This mutation likely resulted in EcoRI cutting at the next site downstream in the isolates that yielded the 5.0-kb fragment.
In conclusion, we have identified a DNA region from a virulent strain of S. suis type 2 that encodes a protein with a molecular mass of 38 kDa. The gene and its product are present in strains belonging to the pathogenic serotypes of S. suis and most other S. suis serotypes. The protein was detected in the surface and cell wall fractions, is immunogenic in swine infected with strains of S. suis type 2 as well as in swine vaccinated with the purified protein, and provided protection against challenge with a strain of a homologous serotype. The biological functions of the protein antigen with respect to pathogenesis and the ability of antibody against the antigen to confer protective immunity against infections caused by other S. suis capsular types are the subjects of further research.
This work was supported by the National Pork Producers Council (grant NPPC 00-131).
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