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Clinical and Diagnostic Laboratory Immunology, October 2005, p. 1184-1190, Vol. 12, No. 10
1071-412X/05/$08.00+0 doi:10.1128/CDLI.12.10.1184-1190.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.
Department of Microbiology and Immunology, Georgetown University Medical Center, Washington, D.C.,1 Department of Oral Biology, University of Manitoba, Winnipeg, Canada,2 Department of Pediatrics, Georgetown University Medical Center, Washington, D.C.,3 Department of Medicine, INOVA Fairfax Hospital, Fairfax, Virginia4
Received 11 May 2005/ Returned for modification 20 June 2005/ Accepted 14 July 2005
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Successful colonization depends on the ability of the bacteria to circumvent host innate and acquired immunity in order that they can adhere to oral surfaces and avoid removal via the flushing action of saliva and mastication. Neonatal saliva has been shown to contain secretory immunoglobulin A (SIgA) antibodies that react with these bacteria (9, 10) but these antibodies appear insufficient to completely block adherence and subsequent colonization. Several species of viridans streptococci including the pioneers, S. mitis bv. 1 and S. oralis, produce IgA1 protease (11, 26) which may inactivate SIgA1 antibodies in saliva. In this context, it is interesting that over 90% of SIgA in the saliva of neonates belongs to subclass 1 (16). Furthermore, viridans streptococci elaborate extracellular polysaccharide (4) and bind salivary macromolecules (40) which may mask them from host immunity. In addition, the pioneer viridans streptococcus S. mitis bv. 1 exhibits clonal and antigenic diversity and frequent turnover (15, 22, 23) which may prevent the targeting of SIgA antibodies to colonizing clones.
The population dynamics of S. mitis bv. 1 has been studied within parents and their infants (22, 23) and within neonates (15). These studies reported extensive diversity within an individual as well as between subjects. The purpose of the present paper was to extend our studies of genetic diversity and clonal turnover of S. mitis bv. 1 (15) to a large number of isolates collected from infants from birth to 1 year of age. We examined clonal diversity and turnover of S. mitis bv. 1 colonizing the cheeks, tongue, and primary central incisors. In an attempt to improve our chances of demonstrating the persistence of specific clones in the infants' mouths we selected a subset of our S. mitis bv. 1 isolates that produced neuraminidase, ß-N-acetylglucosaminidase, ß-N-acetyl-galactosaminidase, and IgA1 protease. Strains with this phenotype represented 1/3 of the total number of isolates of S. mitis bv. 1 recovered from these infants and this phenotype was similarly numerically significant in their mothers' saliva (submitted). Therefore, we compared isolates from the mothers' saliva collected in parallel with those from buccal mucosa, tongue and primary incisors of the infants to determine whether the mothers' saliva was the origin of the clones colonizing their infants.
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Sample collection and processing. The mucosal surfaces of the cheeks, dorsum of the tongue, and primary central incisors (once erupted) of each neonate were sampled. The two areas of the oral mucosa were sampled at each visit using separate swabs. The left and right buccal mucosae were sampled with one swab and the dorsum of the tongue was sampled with a second swab. As soon as teeth erupted (usually the lower central incisors) their labial surfaces were swabbed using a third swab. The swabs were transported to the laboratory and plated within 1 h of collection. The head of each swab was cut off with sterile scissors and dropped into an individual tube containing 2 ml of phosphate-buffered saline (PBS), pH 7.4. The bacteria were dispersed by ultrasound at 80 W for 10 s using a Branson Sonifier 250 (Branson Ultrasonics Corp., Danbury, CT) equipped with a 3-mm diameter micro probe. The dispersed samples were serially diluted in sterile PBS to 105.
A minimum of 5 ml of saliva was collected from each mother at each visit by having the subject drool into a 50-ml sterile, screw-cap, centrifuge tube. No salivary stimulation was employed. Immediately after collection EDTA was added to a final concentration of 5 mM to prevent formation of heterotypic calcium ion-dependent macromolecular complexes and to inhibit IgA1 protease activity. Serial dilutions from the swab and saliva samples were immediately inoculated onto trypticase soy agar containing 5% sheep blood (BBL, Baltimore, MD) using an Autoplate 4000 spiral plater (Spiral Biotech, Bethesda, MD). The plates were incubated in an atmosphere of 5% CO2 in air at 37°C for 48 h.
Identification of Streptococcus mitis bv. 1. Streptococci were identified as previously described in detail (32). Briefly, the isolates were examined for hemolysis, stained by Gram's method, catalase tested, and subjected to the following biochemical tests: fermentation of amygdalin and glucose; hydrolysis of arginine and esculin; production of neuraminidase, ß-N-acetylglucosaminidase, ß-N-acetylgalactosaminidase, IgA1 protease and extracellular polysaccharide. In addition, isolates were tested for their ability to bind salivary amylase (12, 25).
Preparation of DNA. Genomic DNA was extracted and purified from the S. mitis bv. 1 isolates using the Puregene DNA isolation kit (Gentra Systems Inc., Minneapolis, Minn.). DNA concentration and purity were determined spectrophotometrically by measuring the A260 and A280 (Unicam UV1, Cambridge, United Kingdom).
Restriction endonuclease digestion and electrophoresis of streptococcal DNA. Separate aliquots of genomic DNA (3 to 5 µg) obtained from the S. mitis bv. 1 isolates were digested individually with 15 U of PvuII and 15 U of SalI (Roche Diagnostics, Basel, Switzerland) according to the manufacturer's instructions. Digested DNA was separated by horizontal 0.8% agarose gel electrophoresis for 16.5 h at 20 V in 1x TAE buffer (10x TAE, pH 8.3; Fisher Biotech, Silver Spring, MD). Digoxigenin (DIG)-labeled DNA molecular weight markers II (0.12 to 23.1 kbp; Roche Dignostics) were run on each gel to serve as DNA size standards.
Synthesis of digoxigenin-labeled Escherichia coli rRNA cDNA probes. Digoxigenin-labeled rRNA cDNA probes were synthesized by using the DIG DNA labeling kit (Roche Diagnostics). E coli 16S and 23S rRNA were used as templates for the randomly-primed DNA labeling.
Southern blot hybridization. Following pretreatment of the gels (41) DNA was transferred to Hybond N+ nylon membranes (Amersham Biosciences Corp., Piscataway, NJ) using a Bio-Rad 780 Vacuum blotter (Bio-Rad Laboratories, Hercules, CA), according to the manufacturer's protocol. Transferred DNA was fixed to the membrane by exposure to UV light for 3 min (Vilbert Lourmat TFX-20.M, France). The membranes were blocked with 5x SSC (1x SSC is 0.15 M NaCl plus 0.015 M sodium citrate) containing 1% N-lauroylsarcosine, 0.02% sodium dodecyl sulfate (SDS), 50% formamide, and 2% Roche blocking reagent for 1 h at 42°C. Membranes were then hybridized overnight at 42°C with the denatured DIG-labeled probe in blocking solution. The hybridized probe was detected with a DIG nucleic acid detection kit (Roche Diagnostics).
The PvuII ribotype pattern generated from each streptococcal isolate and the HindIII-digested DNA standards were scanned with an HP Scanjet 5400c flatbed scanner (Hewlett-Packard USA, Houston, TX). The resulting images were imported into GelCompar II (Applied Maths, Kortrijk, Belgium) and normalized using the molecular weight markers. The resulting patterns were compared using Jaccard analysis and UPGMA. All isolates with identical PvuII ribotypes were also ribotyped following digestion of chromosomal DNA with SalI. Only isolates with identical PvuII and identical SalI ribotypes were considered to represent the same clone.
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A summary of the distribution of the isolates and clones obtained from the infants is shown in Table 1. Of the 859 isolates, 53% were obtained from the cheeks (454), 39% from the tongue (335), and 8% from the teeth (70) (Table 1). The 859 isolates yielded 568 unique ribotype patterns (66%) distributed on all three surfaces examined. Each of the three surfaces examined, whether shedding or nonshedding, displayed the same degree of diversity (Table 1). Among the four infants it was rare to detect the same clone colonizing more than one surface at a given visit. The percentage of clones found on more than one surface ranged between 7.6% and 10.7% (Table 1).
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TABLE 1. Number and distribution of isolates and clones obtained from four infants from birth to 1 year of age
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TABLE 2. Distribution of unique clones represented by more than one isolate in the four infants at nine visits from birth to 1 year of age
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FIG. 1. Persistence of clones in the infants' mouths. Thirty clones were isolated from the infants' mouths on more than one visit. There were 7 persistent clones from infant 3 (A), 17 from infant 6 (B), and 3 each from infant 8 (C) and from infant 10 (D). Solid horizontal lines indicate the visits at which the clones were recovered. Bold horizontal lines indicate a clone that was represented by more than one isolate. The interrupted lines connect identical clones. Clones were not always isolated from the same surface on subsequent visits. The surfaces examined were the upper and lower central incisors (D), dorsum of the tongue (T), and buccal mucosa (B).
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TABLE 3. Number of isolates and clones recovered from saliva collected from four mothers in parallel with infant samples
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FIG. 2. Persistence of clones in the mothers' saliva. Four clones were isolated from the mothers' saliva at two visits: one clone from mother 3 and three clones from mother 6. No persisting clones were detected in the saliva from mothers 8 and 10 over the 1-year sampling period. Solid horizontal lines indicate the visits at which the clones were recovered. Bold horizontal lines indicate a clone that was represented by more than one isolate. The interrupted lines connect identical clones.
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FIG. 3. Clones shared between infant and mother. There were five clones that were detected in both infants (B) and mothers (M). The visits at which the clones were detected are shown by solid horizontal lines. The number and location of the clones are indicated in parentheses. Temporally, it appeared that clones of S. mitis bv. 1 could be transferred from mother to infant but, also, from infant to mother.
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Consistent with previous findings (15, 22, 23) the vast majority of clones were isolated once only, and rarely from more than one surface. However, 30 clones were isolated on two or more subsequent visits and were not always found on the same surface from which they were isolated initially, although there was no preference for clones to move from one particular surface to another. These observations support those of Howhy et al. (22, 23) who demonstrated the persistence of S. mitis bv. 1 clones on buccal and pharyngeal surfaces of adults. However, they did not detect persistence of clones in the two infants that they examined, nor did they demonstrate transfer of clones from one habitat to another over time. Consequently, the data from the current study represent some of the few that indicate movement of clones within the oral cavity of infants that could contribute to the survival of S. mitis bv. 1. Moreover, clones did not appear to exhibit specific tropisms for transfer to any particular sampled surface, showing that they were capable of colonizing both soft and hard tissues. There was little evidence to suggest that clones, either persistent in a habitat or transferring to a habitat, could increase the numbers of their population significantly. Such a result counts against the concept that, in infants, specific clones of S. mitis bv. 1 best suited to a habitat persist and become a predominant part of the population. Our findings support the suggestion of Hohwy et al. (23) that the species niche in the habitat appears to be maintained by a succession of clones rather than by stable strains.
It is interesting to ask whether the extraordinary diversity and turnover of S. mitis bv. 1 observed in the oral cavity of an individual infant are unique to this species or whether these properties are shared with other commensal oral bacteria. Elucidating the population structure of commensal bacteria requires that a significant number of isolates be collected from each site and at each visit if the full diversity of genotypes is to be revealed (1). Indeed, Hohwy et al. (23) determined that, in their study, clonal diversity was likely underestimated when less than 15 isolates per subject were examined, and Gronoos and Alaluusua (20) reported that the number of genotypes of mutans streptococci that they detected was directly related to the number of isolates collected from each subject. Therefore, as much of the published data result from examination of small numbers of isolates, diversity in other species of commensal oral bacteria probably has been underestimated. Furthermore, several different methods, including restriction fragment length polymorphism, ribotyping and various forms of arbitrary primed PCR that differ in their sensitivity, have been employed to determine diversity, several different hard and soft tissue sites in the mouth have been sampled and various ages of subjects have been examined. Among the viridans streptococci, S. oralis which, genetically, is extremely closely related to S. mitis (24) also appears to be highly diverse (3). In contrast, the diversity of S. sanguinis (31) and the mutans streptococi (S. mutans and S. sobrinus) appears to be limited (1, 5, 20, 28, 34, 38). Among gram-negative commensal oral bacteria, studies of Eikenella corrodens (7, 8, 18), Fusobacterium nucleatum (19, 42), and Prevotella melaninogenica (27) show that individuals may harbor multiple genotypes whereas, in contrast, colonization with Porphyromonas gingivalis (43) and Actinobacillus actinomycetemcomitans (13, 21) appears to be monoclonal.
One of the impressive features of S. mitis bv. 1 colonization is the rate of clonal turnover/replacement. In our studies (15) and those of others (22, 23) it was rare to recover the same clone at successive visits even when such visits were but a few weeks apart. It is interesting that while stability of S. oralis was not observed in oral rinse samples over a 12-week period, there was evidence of stability in parallel samples of approximal dental plaque (3). Furthermore, genotypes of mutans streptococci, whose sole habitat is the tooth surface, have been found to persist over periods as long as 7 years (1, 5, 14, 28, 34).
There are few data on the persistence of genotypes of gram-negative bacteria in the mouth; however, in a study of Fusobacterium nucleatum, no identical clones were observed at baseline and at a 16-month follow-up visit (42), whereas persistent ribotypes of Prevotella melaninogenica were observed over a 2-year period (27).
From these data it could be argued that clonal stability and, as a consequence, reduced clonal diversity are facilitated by the protected habitat of the gingival sulcus/pocket and growth in the dental plaque biofilm. However, Hohwy et al. (23) failed to detect persisting genotypes on the tooth surfaces of two adults over a 5-year period and, similarly, there was no evidence of persistent dental clones in the current study. Furthermore, there was no evidence that clonal diversity on tooth surfaces was less than that observed on mucosal surfaces, although, admittedly, the period of observation was short.
An obvious question remains the source of these diverse genotypes of S. mitis bv. 1 that colonize the infant's mouth and that appear to be in a constant state of flux. For the mutans streptococci there is evidence of transmission both between parents (28, 39) and from parents, particularly the mother, to their/her children (5, 28-30, 35-37). For P. gingivalis, A. actinomycetemcomitans, F. nucleatum, and P. melaninogenica transmission between parents (spouses) (39, 43) and their children (2, 27, 33, 42) also is evident. Although transmission of clones may occur within the family unit it appears, for the most part, that the set of clones found within a family unit are unique to that unit and are not shared with other individuals. In marked contrast to the findings for these other commensal oral bacteria, the results of the current study and those of previous studies of S. mitis bv. 1 (22, 23) show a lack of fidelity between mother and infant clones that does not support the neonatal acquisition of this bacterium from either mother or father. If the large number and frequent turnover of genotypes of S. mitis bv. 1 within an infant cannot be explained by frequent acquisition of new exogenous clones from the mother and their subsequent loss to what can these phenomena be attributed? Other possibilities may include any or all of the following: (i) newly emerging clones arising from other habitats in the respiratory tract colonized by this species (23); (ii) the numbers of particular clones fluxing such that they fall below the level of detection, but are still present in the mouth; (iii) a high rate of genetic mutation; and (iv) horizontal gene transfer. However, Hohwy et al. (28) have discounted recombination in situ as playing a major role in clonal diversity and turnover by analyzing the pairwise genetic relatedness of isolates from each of two infants to isolates of the populations combined by MLEE. These data yielded an IA value that was statistically significantly different from zero ruling out that maximum genetic diversity had developed by recombination within each subpopulation.
It remains unclear whether the factors that drive clonal diversity and turnover are dietary, the availability of host components for metabolism, interactions between bacteria or host immunity. We have hypothesized that mucosal immunity contributes to the environmental pressure driving the genetic diversity and clonal turnover of S. mitis bv. 1 and may be a mechanism employed by this bacterium to evade immune elimination. We have detected salivary SIgA antibodies reactive with S. mitis bv. 1 within the first month postpartum. However, although there was a fivefold increase in the concentration of salivary SIgA immunoglobulin between birth and age 2 years, SIgA1 and SIgA2 antibodies reactive with S. mitis bv. 1 showed significant decreases over this period (10). Clearly, these antibodies were unable to prevent colonization of S. mitis bv. 1. This finding might be explained by the fact that sequential adsorption of saliva with several species of viridans streptococci and Enterococcus faecalis, a commensal of the large bowel, removed almost all salivary SIgA antibodies reactive with S. mitis bv. 1. Therefore, it is clear that the SIgA antibodies were directed to shared antigens and not to S. mitis bv. 1-specific antigens involved in the adherence of the bacterium to host tissues. It is possible that each clone of S. mitis bv. 1 expresses a subset of unique antigens and that clonal turnover/replacement of this bacterium is an example of antigenic variation or drift. Experiments are currently in progress to test this hypothesis.
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-amylase discriminates certain viridans group streptococcal species. J. Clin. Microbiol. 28:2576-2577.
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